CLAMP Clinical Language Annotation, Modeling, and Processing Toolkit, is a comprehensive clinical Natural Language Processing (NLP) software that enables recognition and automatic encoding of clinical information in narrative patient reports.
MONAI (Medical Open Network for Artificial Intelligence) is a freely available, community-supported, PyTorch-based framework for deep learning in healthcare imaging. (application available on HyperGator)
NetLogo is a programmable modeling environment for simulating natural and social phenomena. It provides multi-agent programmable modeling environment.
OpenRefineA powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
Parabricksis a software suite for genomic analysis that improves analytical speed by taking advantage of a GPU-accelerated pipeline.
Tabula mining data locked in .pdf fiiles. Tabula allows you to extract that data into a CSV or Microsoft Excel spreadsheet using a simple, easy-to-use interface.
Graphviz is a open source graph visualization tool. It can convert graphs to pdf.